cdttable package

+cdttable.add_rm_dependency(choice)

ADD_RM_DEPENDENCY add or remove java class dependency

Detailed explanation goes here

+cdttable.check_preprocess_result(preprocess_result)

CHECK_PREPROCESS_RESULT Check preprocess result

fields exist.

+cdttable.find_event_times_given_codes(alignCodes, eventCodes, eventTimes)

FIND_EVENT_TIMES_GIVEN_CODES find (earlist) time of events given coides.

Parameters:
  • alignCodes – codes to find to time
  • eventCodes – array of event codes
  • eventTimes – array of event times.
Returns:

times of first occuring alignCodes.
+cdttable.import_files(preprocess_func, arglist, import_params_path)

IMPORT_FILES convert preprocessed data into CDT. Detailed explanation goes here

+cdttable.import_one_file(preprocess_result, import_params)

IMPORT_ONE_FILE get CDT table for one file

params preprocess_result:
 the canonical preprocessed result with event_codes, event_times, spike_times, and spike_locations.
params import_params:
 Java object representing import params obtained via +cdttable.read_import_params().
return:one CDTTable.

See also

+cdttable.import_one_trial(),

+cdttable.import_one_trial(trial_struct, import_params)

IMPORT_ONE_TRIAL import one trial

param trial_struct:
 intermediate format storing all info needed for this trial
param import_params:
 Java object representing import params obtained via +cdttable.read_import_params().
return:one row in CDT Table.

See also

+cdttable.import_one_trial_startstoptime(), +cdttable.import_one_trial_trial_start_stop_time(), +cdttable.import_one_trial_getevents(), +cdttable.import_one_trial_getspikes(),

+cdttable.import_one_trial_getevents(CDTTableRow, trial_struct)

IMPORT_ONE_TRIAL_GETEVENTS get event times of a trial.

param CDTTableRow:
 CDTTableRow passed by +cdttable.import_one_trial().
param trial_struct:
 trial_struct from +cdttable.import_one_trial()

notice that these are all open intervals, consistent with Corentin’s old program.

+cdttable.import_one_trial_getspikes(CDTTableRow, trial_struct)

IMPORT_ONE_TRIAL_GETSPIKES get spike times of a trial.

param CDTTableRow:
 CDTTableRow passed by +cdttable.import_one_trial().
param trial_struct:
 trial_struct from +cdttable.import_one_trial()

notice that these are all open intervals, consistent with Corentin’s old program.

+cdttable.import_one_trial_startstoptime(CDTTableRow, trial_struct, import_params)

IMPORT_ONE_TRIAL_STARTSTOPTIME find start and stop times of subtrials

param CDTTableRow:
 CDTTableRow passed by +cdttable.import_one_trial().
param trial_struct:
 trial_struct from +cdttable.import_one_trial()
param import_params:
 import_params from +cdttable.import_one_trial()

See also

+cdttable.find_event_times_given_codes(),

+cdttable.import_one_trial_trial_start_stop_time(CDTTableRow, trial_struct, import_params)

IMPORT_ONE_TRIAL_TRIAL_START_STOP_TIME find start and stop times the trial

param CDTTableRow:
 CDTTableRow passed by +cdttable.import_one_trial().
param trial_struct:
 trial_struct from +cdttable.import_one_trial()
param import_params:
 import_params from +cdttable.import_one_trial()

See also

+cdttable.find_event_times_given_codes(),

+cdttable.read_import_params(import_params_path)

READ_IMPORT_PARAMS read import parameters

Parameters:import_params_path – path to JSON file of import params
Returns:[ import_params_java, isValid ]. second argument logical, whether import_params valid or not, first one being the java object of params if isValid, and empty ([]) otherwise.
+cdttable.root_dir()

ROOT_DIR return directory of package root.

this is convenient for getting locations of various files in the package.